HL_9HYM_023
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9HYM|1|b|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HYM_023 not in the Motif Atlas
- Homologous match to HL_7A0S_018
- Geometric discrepancy: 0.1686
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9HYM|1|b|U|566
9HYM|1|b|U|567
9HYM|1|b|U|568
9HYM|1|b|U|569
9HYM|1|b|G|570
9HYM|1|b|U|571
9HYM|1|b|A|572
9HYM|1|b|U|573
9HYM|1|b|A|574
9HYM|1|b|A|575
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain d
- 50S ribosomal protein L3
- Chain l
- Large ribosomal subunit protein uL15
- Chain q
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein bL21
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