HL_9HYM_051
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9HYM|1|b|A|1780, 9HYM|1|b|U|1781, 9HYM|1|b|U|1782, 9HYM|1|b|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HYM_051 not in the Motif Atlas
- Geometric match to HL_8B0X_073
- Geometric discrepancy: 0.0717
- The information below is about HL_8B0X_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9HYM|1|b|U|1777
9HYM|1|b|U|1778
9HYM|1|b|U|1779
9HYM|1|b|A|1780
9HYM|1|b|U|1781
9HYM|1|b|U|1782
9HYM|1|b|A|1783
9HYM|1|b|A|1784
9HYM|1|b|A|1785
9HYM|1|b|A|1786
9HYM|1|b|A|1787
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
- Chain z
- Gelation factor
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