HL_9HYM_057

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUAGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

9HYM|1|b|G|2112, 9HYM|1|b|G|2123, 9HYM|1|b|U|2130, 9HYM|1|b|U|2131, 9HYM|1|b|G|2144, 9HYM|1|b|A|2147, 9HYM|1|b|U|2149, 9HYM|1|b|G|2159, 9HYM|1|b|G|2162

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HYM|1|b|C|2103
9HYM|1|b|C|2104
9HYM|1|b|U|2105
9HYM|1|b|U|2106
9HYM|1|b|G|2107
9HYM|1|b|A|2108
9HYM|1|b|U|2109
9HYM|1|b|G|2110
9HYM|1|b|U|2111
9HYM|1|b|G|2112
9HYM|1|b|U|2113
9HYM|1|b|A|2114
9HYM|1|b|G|2115
9HYM|1|b|G|2116
9HYM|1|b|A|2117
9HYM|1|b|U|2118
9HYM|1|b|A|2119
9HYM|1|b|G|2120
9HYM|1|b|G|2121
9HYM|1|b|U|2122
9HYM|1|b|G|2123
9HYM|1|b|G|2124
9HYM|1|b|G|2125
9HYM|1|b|A|2126
9HYM|1|b|G|2127
9HYM|1|b|G|2128
9HYM|1|b|C|2129
9HYM|1|b|U|2130
9HYM|1|b|U|2131
9HYM|1|b|A|2132
9HYM|1|b|G|2133
9HYM|1|b|A|2134
9HYM|1|b|A|2135
9HYM|1|b|G|2136
9HYM|1|b|U|2137
9HYM|1|b|G|2138
9HYM|1|b|U|2139
9HYM|1|b|G|2140
9HYM|1|b|G|2141
9HYM|1|b|A|2142
9HYM|1|b|C|2143
9HYM|1|b|G|2144
9HYM|1|b|C|2145
9HYM|1|b|C|2146
9HYM|1|b|A|2147
9HYM|1|b|G|2148
9HYM|1|b|U|2149
9HYM|1|b|C|2150
9HYM|1|b|U|2151
9HYM|1|b|G|2152
9HYM|1|b|C|2153
9HYM|1|b|A|2154
9HYM|1|b|U|2155
9HYM|1|b|G|2156
9HYM|1|b|G|2157
9HYM|1|b|A|2158
9HYM|1|b|G|2159
9HYM|1|b|C|2160
9HYM|1|b|C|2161
9HYM|1|b|G|2162
9HYM|1|b|A|2163
9HYM|1|b|C|2164
9HYM|1|b|C|2165
9HYM|1|b|U|2166
9HYM|1|b|U|2167
9HYM|1|b|G|2168
9HYM|1|b|A|2169
9HYM|1|b|A|2170
9HYM|1|b|A|2171
9HYM|1|b|U|2172
9HYM|1|b|A|2173
9HYM|1|b|C|2174
9HYM|1|b|C|2175
9HYM|1|b|A|2176
9HYM|1|b|C|2177
9HYM|1|b|C|2178
9HYM|1|b|C|2179
9HYM|1|b|U|2180
9HYM|1|b|U|2181
9HYM|1|b|U|2182
9HYM|1|b|A|2183
9HYM|1|b|A|2184
9HYM|1|b|U|2185
9HYM|1|b|G|2186

Current chains

Chain b

23S rRNA

Nearby chains