HL_9HYM_064

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HYM_064 not in the Motif Atlas

Homologous match to HL_7A0S_057

Geometric discrepancy: 0.2432

The information below is about HL_7A0S_057

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HYM|1|b|C|2374
9HYM|1|b|G|2375
9HYM|1|b|A|2376
9HYM|1|b|A|2377
9HYM|1|b|A|2378
9HYM|1|b|G|2379

Current chains

Chain b

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL33

Chain o

Large ribosomal subunit protein uL18