HL_9HYM_074

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9HYM|1|b|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HYM_074 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1533

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9HYM|1|b|G|2819
9HYM|1|b|A|2820
9HYM|1|b|A|2821
9HYM|1|b|G|2822
9HYM|1|b|A|2823
9HYM|1|b|C|2824
9HYM|1|b|G|2825
9HYM|1|b|A|2826
9HYM|1|b|C|2827

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain n

Large ribosomal subunit protein bL17