HL_9I14_004
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I14_004 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1806
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9I14|1|D4|A|31
9I14|1|D4|U|32
9I14|1|D4|U|33
9I14|1|D4|G|34
9I14|1|D4|A|35
9I14|1|D4|A|36
9I14|1|D4|A|37
9I14|1|D4|A|38
9I14|1|D4|U|39
Current chains
- Chain D4
- A/P tRNA
Nearby chains
- Chain A4
- mRNA
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- 40S ribosomal protein S15
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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