HL_9I14_024

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_024 not in the Motif Atlas

Homologous match to HL_9H3G_025

Geometric discrepancy: 0.0729

The information below is about HL_9H3G_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9I14|1|L5|G|1561
9I14|1|L5|G|1562
9I14|1|L5|A|1563
9I14|1|L5|A|1564
9I14|1|L5|A|1565
9I14|1|L5|C|1566

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SN

40S ribosomal protein S13