HL_9I14_029

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9I14|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_029 not in the Motif Atlas

Homologous match to HL_8GLP_028

Geometric discrepancy: 0.0606

The information below is about HL_8GLP_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9I14|1|L5|G|1864
9I14|1|L5|G|1865
9I14|1|L5|U|1866
9I14|1|L5|A|1867
9I14|1|L5|A|1868
9I14|1|L5|G|1869
9I14|1|L5|C|1870

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10