HL_9I14_048

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

G(PSU)A(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

9I14|1|L5|A2M|3760

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_048 not in the Motif Atlas

Homologous match to HL_9H3G_052

Geometric discrepancy: 0.1283

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.4

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9I14|1|L5|G|3757
9I14|1|L5|PSU|3758
9I14|1|L5|A|3759
9I14|1|L5|A2M|3760
9I14|1|L5|C|3761
9I14|1|L5|U|3762
9I14|1|L5|A|3763
9I14|1|L5|U|3764
9I14|1|L5|G|3765
9I14|1|L5|A|3766
9I14|1|L5|C|3767

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain A4

mRNA

Chain D4

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA