HL_9I14_066

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

9I14|1|L5|G|4910, 9I14|1|L5|A|4911, 9I14|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I14_066 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.1622

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9I14|1|L5|G|4907
9I14|1|L5|G|4908
9I14|1|L5|A|4909
9I14|1|L5|G|4910
9I14|1|L5|A|4911
9I14|1|L5|G|4912
9I14|1|L5|G|4913
9I14|1|L5|C|4914

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a