HL_9I14_086

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9I14|1|S2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|S2|G|1054
9I14|1|S2|A|1055
9I14|1|S2|U|1056
9I14|1|S2|C|1057
9I14|1|S2|A|1058
9I14|1|S2|G|1059
9I14|1|S2|A|1060
9I14|1|S2|U|1061
9I14|1|S2|A|1062
9I14|1|S2|C|1063
9I14|1|S2|C|1064

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain A4

mRNA

Chain B4

Transfer RNA; tRNA

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26