HL_9I14_090

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAC(B8N)CAACAC

Length

10 nucleotides

Bulged bases

9I14|1|S2|A|1253

QA status

Modified nucleotides: B8N

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|S2|G|1245
9I14|1|S2|A|1246
9I14|1|S2|C|1247
9I14|1|S2|B8N|1248
9I14|1|S2|C|1249
9I14|1|S2|A|1250
9I14|1|S2|A|1251
9I14|1|S2|C|1252
9I14|1|S2|A|1253
9I14|1|S2|C|1254

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain B4

Transfer RNA; tRNA

Chain D4

Transfer RNA; tRNA

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29