HL_9I14_095

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

9I14|1|S2|U|1621, 9I14|1|S2|U|1622, 9I14|1|S2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|S2|A|1614
9I14|1|S2|U|1615
9I14|1|S2|U|1616
9I14|1|S2|G|1617
9I14|1|S2|C|1618
9I14|1|S2|A|1619
9I14|1|S2|A|1620
9I14|1|S2|U|1621
9I14|1|S2|U|1622
9I14|1|S2|A|1623
9I14|1|S2|U|1624
9I14|1|S2|U|1625

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

Small ribosomal subunit protein eS19

Chain Sd

40S ribosomal protein S29