HL_9I2D_015

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GCGGACUGUCCCCAGUGCGC

Length

20 nucleotides

Bulged bases

9I2D|1|L5|G|1178, 9I2D|1|L5|U|1179, 9I2D|1|L5|C|1181, 9I2D|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|G|1171
9I2D|1|L5|C|1172
9I2D|1|L5|G|1173
9I2D|1|L5|G|1174
9I2D|1|L5|A|1175
9I2D|1|L5|C|1176
9I2D|1|L5|U|1177
9I2D|1|L5|G|1178
9I2D|1|L5|U|1179
9I2D|1|L5|C|1180
9I2D|1|L5|C|1181
9I2D|1|L5|C|1182
9I2D|1|L5|C|1183
9I2D|1|L5|A|1184
9I2D|1|L5|G|1185
9I2D|1|L5|U|1186
9I2D|1|L5|G|1187
9I2D|1|L5|C|1188
9I2D|1|L5|G|1189
9I2D|1|L5|C|1190

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like