HL_9I2D_052

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

9I2D|1|L5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I2D_052 not in the Motif Atlas

Homologous match to HL_8GLP_054

Geometric discrepancy: 0.0353

The information below is about HL_8GLP_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9I2D|1|L5|U|3796
9I2D|1|L5|C|3797
9I2D|1|L5|U|3798
9I2D|1|L5|A|3799
9I2D|1|L5|A|3800
9I2D|1|L5|U|3801
9I2D|1|L5|U|3802
9I2D|1|L5|A|3803
9I2D|1|L5|G|3804

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CR

Eukaryotic peptide chain release factor subunit 1

Chain LV

60S ribosomal protein L23

Chain S2

Small subunit ribosomal RNA; SSU rRNA