HL_9I2E_108

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9I2E|1|S2|U|1300, 9I2E|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|S2|A|1295
9I2E|1|S2|U|1296
9I2E|1|S2|U|1297
9I2E|1|S2|G|1298
9I2E|1|S2|A|1299
9I2E|1|S2|U|1300
9I2E|1|S2|A|1301
9I2E|1|S2|G|1302
9I2E|1|S2|C|1303
9I2E|1|S2|U|1304

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin