HL_9I2F_003

3D structure

PDB id

9I2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of retron Eco2 (Ec67)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAUC

Length

5 nucleotides

Bulged bases

9I2F|1|F|A|30, 9I2F|1|F|U|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I2F_003 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.2179

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9I2F|1|F|G|29
9I2F|1|F|A|30
9I2F|1|F|A|31
9I2F|1|F|U|32
9I2F|1|F|C|33

Current chains

Chain F

RNA (132-MER)

Nearby chains

Chain C

Retron Ec67 protein