HL_9I89_013

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCACGUGAAAU

Length

11 nucleotides

Bulged bases

9I89|1|A|G|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_013 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3627

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9I89|1|A|G|428
9I89|1|A|C|429
9I89|1|A|A|430
9I89|1|A|C|431
9I89|1|A|G|432
9I89|1|A|U|433
9I89|1|A|G|434
9I89|1|A|A|435
9I89|1|A|A|436
9I89|1|A|A|437
9I89|1|A|U|438

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL28