HL_9I89_021

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

9I89|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_021 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.1456

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9I89|1|A|U|686
9I89|1|A|G|687
9I89|1|A|A|688
9I89|1|A|A|689
9I89|1|A|U|690
9I89|1|A|A|691
9I89|1|A|G|692

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL33A

Chain 8

Large ribosomal subunit protein bL35

Chain O

Large ribosomal subunit protein uL15