HL_9I89_023
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 9I89|1|A|U|792, 9I89|1|A|A|796, 9I89|1|A|A|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I89_023 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.0873
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
9I89|1|A|C|789
9I89|1|A|G|790
9I89|1|A|U|791
9I89|1|A|U|792
9I89|1|A|G|793
9I89|1|A|A|794
9I89|1|A|A|795
9I89|1|A|A|796
9I89|1|A|A|797
9I89|1|A|G|798
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain 7
- Large ribosomal subunit protein bL34
- Chain H
- Large ribosomal subunit protein uL3
- Chain V
- Large ribosomal subunit protein uL22
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