HL_9I89_035

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

9I89|1|A|U|1433, 9I89|1|A|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_035 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.3773

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9I89|1|A|G|1426
9I89|1|A|U|1427
9I89|1|A|U|1428
9I89|1|A|G|1429
9I89|1|A|A|1430
9I89|1|A|U|1431
9I89|1|A|A|1432
9I89|1|A|U|1433
9I89|1|A|U|1434
9I89|1|A|C|1435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

Large ribosomal subunit protein uL23