HL_9I89_040

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9I89|1|A|A|1658, 9I89|1|A|A|1660, 9I89|1|A|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_040 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1451

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9I89|1|A|C|1656
9I89|1|A|G|1657
9I89|1|A|A|1658
9I89|1|A|C|1659
9I89|1|A|A|1660
9I89|1|A|C|1661
9I89|1|A|A|1662
9I89|1|A|G|1663

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34

Chain V

Large ribosomal subunit protein uL22