HL_9I89_045

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UUUAUCAAAAA

Length

11 nucleotides

Bulged bases

9I89|1|A|A|1807, 9I89|1|A|U|1808, 9I89|1|A|C|1809, 9I89|1|A|A|1813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_045 not in the Motif Atlas

Geometric match to HL_8B0X_073

Geometric discrepancy: 0.089

The information below is about HL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

10

Unit IDs

9I89|1|A|U|1804
9I89|1|A|U|1805
9I89|1|A|U|1806
9I89|1|A|A|1807
9I89|1|A|U|1808
9I89|1|A|C|1809
9I89|1|A|A|1810
9I89|1|A|A|1811
9I89|1|A|A|1812
9I89|1|A|A|1813
9I89|1|A|A|1814

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL34

Chain G

Large ribosomal subunit protein uL2