HL_9I89_048

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9I89|1|A|A|1940

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_048 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1794

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9I89|1|A|G|1937
9I89|1|A|U|1938
9I89|1|A|A|1939
9I89|1|A|A|1940
9I89|1|A|C|1941
9I89|1|A|U|1942
9I89|1|A|A|1943
9I89|1|A|U|1944
9I89|1|A|A|1945
9I89|1|A|A|1946
9I89|1|A|C|1947

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA