HL_9I89_052

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9I89|1|A|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1119

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9I89|1|A|C|2275
9I89|1|A|U|2276
9I89|1|A|G|2277
9I89|1|A|G|2278
9I89|1|A|G|2279
9I89|1|A|G|2280
9I89|1|A|C|2281
9I89|1|A|G|2282
9I89|1|A|G|2283

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain P

Large ribosomal subunit protein uL16

Chain Z

Large ribosomal subunit protein bL27