HL_9I89_080

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_080 not in the Motif Atlas

Homologous match to HL_6CZR_078

Geometric discrepancy: 0.1506

The information below is about HL_6CZR_078

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9I89|1|a|U|304
9I89|1|a|G|305
9I89|1|a|A|306
9I89|1|a|G|307
9I89|1|a|A|308
9I89|1|a|G|309

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

Small ribosomal subunit protein uS4

Chain f

Small ribosomal subunit protein uS5

Chain r

Small ribosomal subunit protein uS17