HL_9I89_081

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_081 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1461

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9I89|1|a|A|328
9I89|1|a|A|329
9I89|1|a|C|330
9I89|1|a|U|331
9I89|1|a|G|332
9I89|1|a|A|333
9I89|1|a|G|334
9I89|1|a|A|335
9I89|1|a|C|336
9I89|1|a|A|337
9I89|1|a|C|338
9I89|1|a|G|339
9I89|1|a|G|340
9I89|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein bS16

Chain u

Small ribosomal subunit protein bS20