HL_9I89_082

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9I89|1|a|A|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_082 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.1428

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

9I89|1|a|C|350
9I89|1|a|U|351
9I89|1|a|A|352
9I89|1|a|C|353
9I89|1|a|G|354
9I89|1|a|G|355

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein uL14

Chain S

Large ribosomal subunit protein bL19