HL_9I89_096

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9I89|1|a|G|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9I89_096 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.203

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9I89|1|a|G|1101
9I89|1|a|U|1102
9I89|1|a|U|1103
9I89|1|a|A|1104
9I89|1|a|A|1105
9I89|1|a|G|1106
9I89|1|a|U|1107
9I89|1|a|C|1108

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS2

Chain h

Small ribosomal subunit protein uS7