HL_9I89_101
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- GAUCAGCAUGC
- Length
- 11 nucleotides
- Bulged bases
- 9I89|1|a|U|1375
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9I89_101 not in the Motif Atlas
- Homologous match to HL_6CZR_101
- Geometric discrepancy: 0.2584
- The information below is about HL_6CZR_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9I89|1|a|G|1367
9I89|1|a|A|1368
9I89|1|a|U|1369
9I89|1|a|C|1370
9I89|1|a|A|1371
9I89|1|a|G|1372
9I89|1|a|C|1373
9I89|1|a|A|1374
9I89|1|a|U|1375
9I89|1|a|G|1376
9I89|1|a|C|1377
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- Small ribosomal subunit protein uS9
- Chain k
- Small ribosomal subunit protein uS10
- Chain o
- Small ribosomal subunit protein uS14B
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