HL_9IOT_002

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAUAUGAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_002 not in the Motif Atlas

Geometric match to HL_5J7L_135

Geometric discrepancy: 0.082

The information below is about HL_5J7L_135

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80241.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9IOT|1|A|U|87
9IOT|1|A|G|88
9IOT|1|A|A|89
9IOT|1|A|U|90
9IOT|1|A|A|91
9IOT|1|A|U|92
9IOT|1|A|G|93
9IOT|1|A|A|94
9IOT|1|A|A|95

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein uL29

Chain V

Large ribosomal subunit protein uL23

Chain W

Large ribosomal subunit protein uL24