HL_9IOT_006

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9IOT|1|A|A|196, 9IOT|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_006 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0677

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9IOT|1|A|G|194
9IOT|1|A|A|195
9IOT|1|A|A|196
9IOT|1|A|A|197
9IOT|1|A|C|198
9IOT|1|A|A|199
9IOT|1|A|U|200
9IOT|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein uL15

Chain Z

Large ribosomal subunit protein bL28