HL_9IOT_008

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_008 not in the Motif Atlas

Geometric match to HL_5J7L_141

Geometric discrepancy: 0.0709

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

9IOT|1|A|C|246
9IOT|1|A|G|247
9IOT|1|A|G|248
9IOT|1|A|C|249
9IOT|1|A|G|250
9IOT|1|A|A|251
9IOT|1|A|G|252

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL35

Chain N

Large ribosomal subunit protein uL15