HL_9IOT_009

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9IOT|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_009 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.1015

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

9IOT|1|A|C|305
9IOT|1|A|U|306
9IOT|1|A|G|307
9IOT|1|A|G|308
9IOT|1|A|A|309
9IOT|1|A|A|310
9IOT|1|A|A|311
9IOT|1|A|G|312

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein uL24