3D structure

PDB id
9IOT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GAUAC
Length
5 nucleotides
Bulged bases
9IOT|1|A|U|321, 9IOT|1|A|A|322
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9IOT_010 not in the Motif Atlas
Geometric match to HL_5J7L_143
Geometric discrepancy: 0.0609
The information below is about HL_5J7L_143
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

9IOT|1|A|G|319
9IOT|1|A|A|320
9IOT|1|A|U|321
9IOT|1|A|A|322
9IOT|1|A|C|323

Current chains

Chain A
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L4

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0944 s