HL_9IOT_014

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_014 not in the Motif Atlas

Geometric match to HL_8P9A_175

Geometric discrepancy: 0.0729

The information below is about HL_8P9A_175

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9IOT|1|A|C|462
9IOT|1|A|G|463
9IOT|1|A|U|464
9IOT|1|A|G|465
9IOT|1|A|A|466
9IOT|1|A|G|467

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain F

50S ribosomal protein L4