HL_9IOT_017
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9IOT|1|A|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9IOT_017 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.0656
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
9IOT|1|A|U|566
9IOT|1|A|U|567
9IOT|1|A|U|568
9IOT|1|A|U|569
9IOT|1|A|G|570
9IOT|1|A|U|571
9IOT|1|A|A|572
9IOT|1|A|U|573
9IOT|1|A|A|574
9IOT|1|A|A|575
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL32
- Chain E
- 50S ribosomal protein L3
- Chain N
- Large ribosomal subunit protein uL15
- Chain S
- Large ribosomal subunit protein bL20
- Chain T
- 50S ribosomal protein L21
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