HL_9IOT_027

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_027 not in the Motif Atlas

Geometric match to HL_5J7L_160

Geometric discrepancy: 0.0812

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9IOT|1|A|G|978
9IOT|1|A|A|979
9IOT|1|A|A|980
9IOT|1|A|A|981
9IOT|1|A|C|982
9IOT|1|A|A|983
9IOT|1|A|A|984
9IOT|1|A|C|985

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL30

Chain S

Large ribosomal subunit protein bL20

Chain T

50S ribosomal protein L21