HL_9IOT_032

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9IOT|1|A|U|1396, 9IOT|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_032 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.1109

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9IOT|1|A|G|1389
9IOT|1|A|U|1390
9IOT|1|A|U|1391
9IOT|1|A|A|1392
9IOT|1|A|A|1393
9IOT|1|A|U|1394
9IOT|1|A|A|1395
9IOT|1|A|U|1396
9IOT|1|A|U|1397
9IOT|1|A|C|1398

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23