HL_9IOT_036

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

9IOT|1|A|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_036 not in the Motif Atlas

Geometric match to HL_9DFE_037

Geometric discrepancy: 0.0938

The information below is about HL_9DFE_037

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

9IOT|1|A|C|1565
9IOT|1|A|A|1566
9IOT|1|A|G|1567
9IOT|1|A|G|1568

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2