HL_9IOT_037

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9IOT|1|A|A|1614, 9IOT|1|A|A|1616, 9IOT|1|A|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_037 not in the Motif Atlas

Geometric match to HL_5J7L_173

Geometric discrepancy: 0.0559

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9IOT|1|A|C|1612
9IOT|1|A|G|1613
9IOT|1|A|A|1614
9IOT|1|A|C|1615
9IOT|1|A|A|1616
9IOT|1|A|C|1617
9IOT|1|A|6MZ|1618
9IOT|1|A|G|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L34

Chain U

50S ribosomal protein L22