HL_9IOT_047

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

9IOT|1|A|6MZ|2030, 9IOT|1|A|A|2031, 9IOT|1|A|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_047 not in the Motif Atlas

Geometric match to HL_5J7L_183

Geometric discrepancy: 0.0745

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9IOT|1|A|G|2027
9IOT|1|A|U|2028
9IOT|1|A|G|2029
9IOT|1|A|6MZ|2030
9IOT|1|A|A|2031
9IOT|1|A|G|2032
9IOT|1|A|A|2033
9IOT|1|A|U|2034
9IOT|1|A|G|2035
9IOT|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain E

50S ribosomal protein L3

Chain T

50S ribosomal protein L21