HL_9IOT_048

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

9IOT|1|A|A|2108, 9IOT|1|A|U|2109, 9IOT|1|A|G|2110, 9IOT|1|A|U|2111, 9IOT|1|A|G|2112, 9IOT|1|A|U|2113, 9IOT|1|A|A|2114, 9IOT|1|A|G|2115, 9IOT|1|A|G|2116, 9IOT|1|A|G|2120, 9IOT|1|A|G|2124, 9IOT|1|A|A|2126, 9IOT|1|A|U|2130, 9IOT|1|A|U|2132, 9IOT|1|A|U|2137, 9IOT|1|A|G|2140, 9IOT|1|A|A|2142, 9IOT|1|A|G|2144, 9IOT|1|A|C|2145, 9IOT|1|A|C|2146, 9IOT|1|A|G|2148, 9IOT|1|A|G|2152, 9IOT|1|A|A|2154, 9IOT|1|A|U|2155, 9IOT|1|A|A|2158, 9IOT|1|A|C|2160, 9IOT|1|A|A|2163, 9IOT|1|A|C|2164, 9IOT|1|A|U|2167, 9IOT|1|A|G|2168, 9IOT|1|A|A|2169, 9IOT|1|A|A|2171, 9IOT|1|A|U|2172, 9IOT|1|A|A|2173, 9IOT|1|A|C|2174, 9IOT|1|A|A|2176, 9IOT|1|A|C|2178, 9IOT|1|A|C|2179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9IOT|1|A|C|2103
9IOT|1|A|C|2104
9IOT|1|A|U|2105
9IOT|1|A|U|2106
9IOT|1|A|G|2107
9IOT|1|A|A|2108
9IOT|1|A|U|2109
9IOT|1|A|G|2110
9IOT|1|A|U|2111
9IOT|1|A|G|2112
9IOT|1|A|U|2113
9IOT|1|A|A|2114
9IOT|1|A|G|2115
9IOT|1|A|G|2116
9IOT|1|A|A|2117
9IOT|1|A|U|2118
9IOT|1|A|A|2119
9IOT|1|A|G|2120
9IOT|1|A|G|2121
9IOT|1|A|U|2122
9IOT|1|A|G|2123
9IOT|1|A|G|2124
9IOT|1|A|G|2125
9IOT|1|A|A|2126
9IOT|1|A|G|2127
9IOT|1|A|G|2128
9IOT|1|A|C|2129
9IOT|1|A|U|2130
9IOT|1|A|U|2131
9IOT|1|A|U|2132
9IOT|1|A|G|2133
9IOT|1|A|A|2134
9IOT|1|A|A|2135
9IOT|1|A|G|2136
9IOT|1|A|U|2137
9IOT|1|A|G|2138
9IOT|1|A|U|2139
9IOT|1|A|G|2140
9IOT|1|A|G|2141
9IOT|1|A|A|2142
9IOT|1|A|C|2143
9IOT|1|A|G|2144
9IOT|1|A|C|2145
9IOT|1|A|C|2146
9IOT|1|A|A|2147
9IOT|1|A|G|2148
9IOT|1|A|U|2149
9IOT|1|A|C|2150
9IOT|1|A|U|2151
9IOT|1|A|G|2152
9IOT|1|A|C|2153
9IOT|1|A|A|2154
9IOT|1|A|U|2155
9IOT|1|A|G|2156
9IOT|1|A|G|2157
9IOT|1|A|A|2158
9IOT|1|A|G|2159
9IOT|1|A|C|2160
9IOT|1|A|C|2161
9IOT|1|A|G|2162
9IOT|1|A|A|2163
9IOT|1|A|C|2164
9IOT|1|A|C|2165
9IOT|1|A|U|2166
9IOT|1|A|U|2167
9IOT|1|A|G|2168
9IOT|1|A|A|2169
9IOT|1|A|A|2170
9IOT|1|A|A|2171
9IOT|1|A|U|2172
9IOT|1|A|A|2173
9IOT|1|A|C|2174
9IOT|1|A|C|2175
9IOT|1|A|A|2176
9IOT|1|A|C|2177
9IOT|1|A|C|2178
9IOT|1|A|C|2179
9IOT|1|A|U|2180
9IOT|1|A|U|2181
9IOT|1|A|U|2182
9IOT|1|A|A|2183
9IOT|1|A|A|2184
9IOT|1|A|U|2185
9IOT|1|A|G|2186

Current chains

Chain A

23S rRNA

Nearby chains