HL_9IOT_050

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9IOT|1|A|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_050 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.0707

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9IOT|1|A|C|2248
9IOT|1|A|U|2249
9IOT|1|A|G|2250
9IOT|1|A|OMG|2251
9IOT|1|A|G|2252
9IOT|1|A|G|2253
9IOT|1|A|C|2254
9IOT|1|A|G|2255
9IOT|1|A|G|2256

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

Large ribosomal subunit protein uL16

Chain Y

Large ribosomal subunit protein bL27