HL_9IOT_068
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 9IOT|1|B|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9IOT_068 not in the Motif Atlas
- Geometric match to HL_5J7L_203
- Geometric discrepancy: 0.0838
- The information below is about HL_5J7L_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9IOT|1|B|C|38
9IOT|1|B|A|39
9IOT|1|B|U|40
9IOT|1|B|G|41
9IOT|1|B|C|42
9IOT|1|B|C|43
9IOT|1|B|G|44
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain G
- Large ribosomal subunit protein uL5
- Chain Q
- Large ribosomal subunit protein uL18
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