HL_9IOT_082

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_082 not in the Motif Atlas

Geometric match to HL_4LFB_033

Geometric discrepancy: 0.0785

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9IOT|1|a|C|522
9IOT|1|a|A|523
9IOT|1|a|G|524
9IOT|1|a|C|525
9IOT|1|a|C|526
9IOT|1|a|G7M|527

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12