HL_9IOT_094
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAUAAA
- Length
- 7 nucleotides
- Bulged bases
- 9IOT|1|a|U|1168
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9IOT_094 not in the Motif Atlas
- Geometric match to HL_1U6B_001
- Geometric discrepancy: 0.254
- The information below is about HL_1U6B_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 397
Unit IDs
9IOT|1|a|U|1165
9IOT|1|a|G|1166
9IOT|1|a|A|1167
9IOT|1|a|U|1168
9IOT|1|a|A|1169
9IOT|1|a|A|1170
9IOT|1|a|A|1171
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain 8
- Small ribosomal subunit protein bS1
- Chain b
- Small ribosomal subunit protein uS2
- Chain u
- 30S ribosomal protein S21
- Chain y
- Ribosome modulation factor
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