HL_9IOT_095

3D structure

PDB id

9IOT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IOT_095 not in the Motif Atlas

Geometric match to HL_4LFB_024

Geometric discrepancy: 0.0684

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9IOT|1|a|C|1265
9IOT|1|a|G|1266
9IOT|1|a|C|1267
9IOT|1|a|G|1268
9IOT|1|a|A|1269
9IOT|1|a|G|1270

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13

Chain s

Small ribosomal subunit protein uS19

Chain z

Ribonuclease I