HL_9IOT_097
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 9IOT|1|a|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9IOT_097 not in the Motif Atlas
- Geometric match to HL_4LFB_030
- Geometric discrepancy: 0.08
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9IOT|1|a|G|1356
9IOT|1|a|A|1357
9IOT|1|a|U|1358
9IOT|1|a|C|1359
9IOT|1|a|A|1360
9IOT|1|a|G|1361
9IOT|1|a|A|1362
9IOT|1|a|A|1363
9IOT|1|a|U|1364
9IOT|1|a|G|1365
9IOT|1|a|C|1366
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
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