HL_9IZP_001

3D structure

PDB id

9IZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of CasLambda2-crRNA-target DNA ternary complex in the incompetent state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UUUUAUA

Length

7 nucleotides

Bulged bases

9IZP|1|B|U|-18, 9IZP|1|B|U|-17, 9IZP|1|B|U|-15

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9IZP_001 not in the Motif Atlas

Geometric match to HL_2ZUE_002

Geometric discrepancy: 0.1942

The information below is about HL_2ZUE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56131.2

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

9IZP|1|B|U|-20
9IZP|1|B|U|-19
9IZP|1|B|U|-18
9IZP|1|B|U|-17
9IZP|1|B|A|-16
9IZP|1|B|U|-15
9IZP|1|B|A|-14

Current chains

Chain B

RNA (58-MER)

Nearby chains

Chain A

Cas Lambda2